March 16, 2010

Fragments of life

"Fragments of Life" is a name trademarked by Emerald Biostructures (formerly deCODE). It refers to Emerald's library of very small molecules that can be tested for their ability to bind to proteins. The general idea is that if a couple of molecules are found to bind to adjacent regions of a protein, their chemical structures can be combined to form larger, tighter-binding compounds that could be further modified to create new drugs. It's a cool concept, though the phrase "Fragments of Life" strikes me as vaguely macabre. I wonder what alternatives were considered and discarded -- "Building Blocks of Life"? "Minuscule Subcomponents of Life"? I suppose "Ingredients for Life" was already taken....

Below are a few other fragments of life that I've been meaning to write about.


A New Running Injury

Two weekends ago I was at Lincoln Park with Phil. He wanted to chase me around the jungle gym area, so off I went, swooping and spinning, dodging and darting -- a sort of "Muhammad Ali meets the Flight of the Bumblebee" routine. We were having so much fun that another boy whom we didn't even know joined in the chase. After 10 or 15 minutes of this, I paused next to a play structure, whirled around to start my next maneuver, and -- WHAM! -- smacked my head right into a metal pole. I dropped to the sandy ground. Phil and Christian ran over and jumped on top of me, celebrating their sudden victory while I moaned softly and felt my forehead start to swell. Nobody had actually seen me bonk my head, but I was embarrassed anyway, as though my I'm-still-a-kid act had abruptly been exposed as a lie.


The F Word

"Is it bad to use the word 'fetish' in a grant application?" I asked a colleague yesterday while editing a proposal that I was about to submit.

"Um, yes," was the response. "It makes me think of foot fetishes."

She was probably right, and yet I was so tired of this proposal that I felt a need to make it interesting to myself again. So "fetish" made the cut, for better or worse:

We believe strongly in the importance of the central goal of this proposal, i.e., linking antibacterial compounds to Burkholderia proteins in a manner that will facilitate validation of new drug targets. This interest in compound-target links is not simply a fetish of the investigators involved in this project; within some pharmaceutical firms, knowing the target of a compound with activity against cells is considered absolutely vital for progressing compounds to leads.

This desire to insert slightly bizarre language into mundane contexts could itself be considered a fetish, I suppose. But I like to think that it gives my writing a certain freewheeling charm.


The Awesomeness of Whiteboards

When I was in college, one of my heroes was math professor Frank Morgan, for the simple reason that he had a whiteboard in his dining room. I considered that the zenith of geeky coolness and vowed that I too would have a whiteboard in my dining room someday.

It hasn't happened yet, but I was reminded of that long-dormant dream by a recent blog entry (Creative Process #1: Why Whiteboard?) by Greg Meyer, an old college dorm-mate of mine. This, in turn, reminded me of something I read in the book Presentation Zen by Garr Reynolds. Garr says that most people -- most scientists, for example -- begin work on a presentation simply by opening PowerPoint and trying to create the first slide, and then the second one, and so on. In contrast, design professionals -- people who create compelling visuals (e.g., advertisements) for a living -- begin with a low-tech medium such as a notepad or a whiteboard because it's more conducive to spontaneity and creativity.

My parents have promised us some money to buy shades for the windows in our kitchen. I wonder if they'd be upset if we bought a whiteboard instead.


The Clear Thinker

When I visited my aunt and uncle in Houston last month, I noticed a framed certificate on the wall from my uncle's employer, General Electric, which congratulated him for being a "Clear Thinker." This award initially struck me as amusing, and my sense is that my uncle has endured considerable teasing because of it. (His son was the one who mounted it on the wall, apparently to ensure that its hilarity would not be forgotten anytime soon.)

The more I thought about this award, though, the less comfortable I felt in mocking it. Isn't clear thinking a trait worthy of praise? In fact, why am I successful as a scientist (to the extent that I am)? I'm not great at using or fixing equipment, I'm not tremendously creative, I don't have a fantastic memory for details, I don't have an insatiable curiosity, and I'm not fanatically devoted to my work.

I do think clearly, however. And if someone gave me an award for that, I think I'd be entitled to be happy about it.

March 6, 2010

The traffic is so bad in Seattle . . .

. . . that even the toy train tracks are hopelessly congested.

Rush hour in the living room

Although one might expect Phil to create a free-flowing transportation utopia, the fact is that a world of bumper-to-bumper traffic is the only one he knows.

February 24, 2010

This is a test

In the summer of 2007, I was hoping to recover from a disappointing DNF at the Western States 100 (June 23rd) in time to compete successfully at the World Cup 100K (September 8th). To gauge my progress, I tested myself with an interval workout of 2 x 3200m (with a 600m jog in between) every couple of weeks or so. My times were as follows:

* July 14: 10:22/10:41.

* July 17: 10:14/10:23. (In my running log, I called this performance "slightly less catastrophic" than the previous one.)

* August 7: 10:18 [quit workout after first interval went poorly].

* August 18: 10:15/10:19.

* September 2: 10:10/10:10.

Since I had run as fast as 9:58/9:57 the previous summer, I was none too thrilled that it took me until my taper to get down to 10:10/10:10. Nonetheless, my World Cup 100K race went well. For me, then, 10:10/10:10 may be a benchmark suggesting acceptable fitness for racing 100K.

With all of that in mind, I headed to the Franklin High School track last Saturday to test the extent to which my legs have recovered from the Rocky Raccoon 100. I guess they're recovering pretty well because I ran 10:13/10:13. I was so satisfied with this workout that I immediately registered for the Mad City 100K on April 10th. Hey, why not -- I still have a few weeks to train for it!

Mad City will, in some ways, be the least wacky of the three spring events to which I have committed so far. On March 21st, I'll be doing the Big Climb, a 69-floor ascent of the Columbia Tower in downtown Seattle, with the PATH to Victory team. And on May 30th I will be at Ski to Sea, handling the running leg (8 miles, straight down the side of Mount Baker) for the Bagelry team.

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